How to quantify energy landscapes of solids.

نویسندگان

  • Artem R Oganov
  • Mario Valle
چکیده

We explore whether the topology of energy landscapes in chemical systems obeys any rules and what these rules are. To answer this and related questions we use several tools: (i) Reduced energy surface and its density of states, (ii) descriptor of structure called fingerprint function, which can be represented as a one-dimensional function or a vector in abstract multidimensional space, (iii) definition of a "distance" between two structures enabling quantification of energy landscapes, (iv) definition of a degree of order of a structure, and (v) definitions of the quasi-entropy quantifying structural diversity. Our approach can be used for rationalizing large databases of crystal structures and for tuning computational algorithms for structure prediction. It enables quantitative and intuitive representations of energy landscapes and reappraisal of some of the traditional chemical notions and rules. Our analysis confirms the expectations that low-energy minima are clustered in compact regions of configuration space ("funnels") and that chemical systems tend to have very few funnels, sometimes only one. This analysis can be applied to the physical properties of solids, opening new ways of discovering structure-property relations. We quantitatively demonstrate that crystals tend to adopt one of the few simplest structures consistent with their chemistry, providing a thermodynamic justification of Pauling's fifth rule.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Exploring the complex free-energy landscape of the simplest glass by rheology

For amorphous solids, it has been intensely debated whether the traditional view on solids, in terms of the ground state and harmonic low energy excitations on top of it, such as phonons, is still valid. Recent theoretical developments of amorphous solids revealed the possibility of unexpectedly complex free-energy landscapes where the simple harmonic picture breaks down. Here we demonstrate th...

متن کامل

Identification of RNA-binding sites in artemin based on docking energy landscapes and molecular dynamics simulation

There are questions concerning the functions of artemin, an abundant stress protein found in Artemiaduring embryo development. It has been reported that artemin binds RNA at high temperatures in vitro, suggesting an RNA protective role. In this study, we investigated the possibility of the presence of RNA-bindingsites and their structural properties in artemin, using docking energy ...

متن کامل

Influence of Dietary Energy and Protein Intake on Yield and Composition of Milk in Crossbred Dairy Cows

The study was carried out on 120 crossbred Holstein × Shahiwal dairy cows for a period of 150 days to quantify the influence of dietary energy and protein intake on yield and composition of milk. Total 12 dairy farms having similar housing systems and holding at least 20 dairy cows in between mid to late lactation were selected for study purposes. The farms were located in the peri-urban and ur...

متن کامل

Can computed crystal energy landscapes help understand pharmaceutical solids?

Computational crystal structure prediction (CSP) methods can now be applied to the smaller pharmaceutical molecules currently in drug development. We review the recent uses of computed crystal energy landscapes for pharmaceuticals, concentrating on examples where they have been used in collaboration with industrial-style experimental solid form screening. There is a strong complementarity in ai...

متن کامل

On Landau Theory and Symmetric Energy Landscapes for Phase Transitions

The aim of this presentation is the development of a general approach for modelling the global complex energy landscapes of phase transitions. For the sake of clarity and brevity the exposition is restricted to martensitic phase transition (i.e., diffusionless phase transitions in crystalline solids). The methods, however, are more broadly applicable. Explicit energy functions are derived for t...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • The Journal of chemical physics

دوره 130 10  شماره 

صفحات  -

تاریخ انتشار 2009